This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision | ||
informatica:hp_z230_400sb_topspin363_1 [2021/08/23 13:50] miquel [Posada en funcionament del TopSpin 3.6.3] |
informatica:hp_z230_400sb_topspin363_1 [2021/08/26 16:06] (current) miquel [Configuració de l'espectròmetre] |
||
---|---|---|---|
Line 56: | Line 56: | ||
===== Posada en funcionament del TopSpin 3.6.3 ===== | ===== Posada en funcionament del TopSpin 3.6.3 ===== | ||
- | <WRAP important> | + | Abans de posar en marxa el TopSpin per primer cop, comprovo que l'IPSO es pugui connectar a l' |
- | El procés d'instal·lació | + | |
- | </ | + | |
- | Poso en marxa el TopSpin | + | Obro el programa '' |
< | < | ||
- | TopSpin 3.6.3 - Copyright (C) 2021 Bruker BioSpin GmbH | + | # cat /etc/hosts |
- | Installation directory: "/ | + | |
- | Waiting for CodeMeter license | + | |
- | + | ||
- | 2021-08-11 12: | + | |
- | Cannot checkout TopSpin CodeMeter license | + | |
- | No matching license entry found for feature " | + | |
- | CmContainer Entry not found, Error 200. | + | |
- | + | ||
- | CodeMeter Runtime Version: 7.10.4196 | + | |
- | empty CodeMeter Server Search List Configuration | + | |
- | + | ||
- | If your workstation controls the spectrometer, | + | |
- | you may run the program without license. | + | |
- | This requires the acquisition server to be ready. | + | |
- | + | ||
- | checking connection to spectrometer (may last several minutes) | + | |
- | no spectrometer service license available | + | |
- | </ | + | |
- | + | ||
- | segurament perquè cal reiniciar-la perquè es descarregui el nou // | + | |
- | + | ||
- | Premo el botó < | + | |
- | + | ||
- | Per resoldre el problema amb la xarxa de l' | + | |
- | + | ||
- | < | + | |
- | # cat hosts | + | |
## 127.0.0.1 | ## 127.0.0.1 | ||
- | ### ::1 localhost localhost.localdomain localhost6 localhost6.localdomain6 | + | ### ::1 |
127.0.0.1 | 127.0.0.1 | ||
- | 158.109.56.18 cie-56-18.uab.es | + | 158.109.54.214 |
# The following lines are related to Bruker NMR spectrometers | # The following lines are related to Bruker NMR spectrometers | ||
Line 121: | Line 92: | ||
| | ||
Docs: man: | Docs: man: | ||
- | [root@cie-56-18 etc]# | + | |
- | [root@cie-56-18 etc]# | + | # systemctl start tftp |
- | [root@cie-56-18 etc]# systemctl start tftp | + | |
- | [root@cie-56-18 etc]# systemctl status tftp | + | # systemctl status tftp |
● tftp.service - Tftp Server | ● tftp.service - Tftp Server | ||
| | ||
- | | + | |
Docs: man: | Docs: man: | ||
- | Main PID: 22927 (in.tftpd) | + | Main PID: 22527 (in.tftpd) |
| | ||
- | | + | |
- | Aug 11 13:16:53 cie-56-18.uab.cat systemd[1]: Started Tftp Server. | + | Aug 24 13:08:07 cie-54-214.uab.cat systemd[1]: Started Tftp Server. |
</ | </ | ||
- | i només posar-lo en marxa, | + | poc després el Wireshark mostra que l' |
< | < | ||
- | # ping -c 5 149.236.99.90 | + | # ping -c 5 spect |
- | PING 149.236.99.90 | + | PING spect (149.236.99.90) 56(84) bytes of data. |
- | 64 bytes from 149.236.99.90: | + | 64 bytes from spect (149.236.99.90): icmp_seq=1 ttl=64 time=0.123 ms |
- | 64 bytes from 149.236.99.90: | + | 64 bytes from spect (149.236.99.90): icmp_seq=2 ttl=64 time=0.153 ms |
- | 64 bytes from 149.236.99.90: | + | 64 bytes from spect (149.236.99.90): icmp_seq=3 ttl=64 time=0.147 ms |
- | 64 bytes from 149.236.99.90: | + | 64 bytes from spect (149.236.99.90): icmp_seq=4 ttl=64 time=0.157 ms |
- | 64 bytes from 149.236.99.90: | + | 64 bytes from spect (149.236.99.90): icmp_seq=5 ttl=64 time=0.147 ms |
- | --- 149.236.99.90 | + | --- spect ping statistics --- |
5 packets transmitted, | 5 packets transmitted, | ||
- | rtt min/ | + | rtt min/ |
</ | </ | ||
- | Torno a posar en marxa el TopSpin i aquest cop detecta la consola i arrenca amb la " | + | ==== Problema amb el PXE de l'IPSO ==== |
+ | |||
+ | Quan vaig a l' | ||
+ | |||
+ | < | ||
+ | PXES on IPSO | ||
+ | Under construction. | ||
+ | |||
+ | System information | ||
+ | </ | ||
+ | |||
+ | i quan clico a l' | ||
+ | |||
+ | < | ||
+ | IPSO Service Web | ||
+ | Main | ||
+ | Version: Diskless 3.6 3 | ||
+ | |||
+ | |||
+ | Fatal error: Unknown action (undefined) | ||
+ | </ | ||
+ | |||
+ | Aquest error ja sortia amb la versió anterior. Després de consultar el registre de missatges del PXE, se m' | ||
+ | |||
+ | < | ||
+ | IPSO Service Web | ||
+ | Main | ||
+ | Version: Diskless 3.6 3 | ||
+ | |||
+ | * Information | ||
+ | * Administration | ||
+ | * RS Devices | ||
+ | * Function Test | ||
+ | * Help | ||
+ | |||
+ | | ||
+ | |||
+ | Main | Information | Administration | RS Devices | Function Test | Help | ||
+ | |||
+ | | ||
+ | </ | ||
+ | |||
+ | ==== Particions a l' | ||
+ | |||
+ | Abans de continuar, munto les particions que hi ha a l' | ||
+ | |||
+ | < | ||
+ | # pvscan | ||
+ | PV / | ||
+ | PV / | ||
+ | Total: 2 [<930.28 GiB] / in use: 2 [<930.28 GiB] / in no VG: 0 [0 ] | ||
+ | |||
+ | # vgscan | ||
+ | Reading volume groups from cache. | ||
+ | Found volume group " | ||
+ | Found volume group " | ||
+ | |||
+ | # lvscan | ||
+ | ACTIVE | ||
+ | ACTIVE | ||
+ | ACTIVE | ||
+ | ACTIVE | ||
+ | ACTIVE | ||
+ | ACTIVE | ||
+ | ACTIVE | ||
+ | ACTIVE | ||
+ | ACTIVE | ||
+ | </ | ||
+ | |||
+ | Edito el fitxer ''/ | ||
+ | |||
+ | < | ||
+ | ## 20210824 - MCE - Munto provisionalment les particions de l' | ||
+ | ## disc dur per poder accedir a les carpetes de | ||
+ | ## configuració del tospin i a les carpetes de dades. | ||
+ | ## | ||
+ | / | ||
+ | / | ||
+ | / | ||
+ | / | ||
+ | |||
+ | ## no cal muntar les antigues particions swap i tmp | ||
+ | ## | ||
+ | ## cie--55--31--vg-swap_1 | ||
+ | ## cie--55--31--vg-tmp | ||
+ | </ | ||
+ | |||
+ | i llavors munto les particions (ignoro els avisos de SELinux perquè no tinc intenció de modificar el contingut d' | ||
+ | |||
+ | < | ||
+ | # mount -v / | ||
+ | mount: / | ||
+ | mount: / | ||
+ | |||
+ | # mount -v / | ||
+ | mount: / | ||
+ | mount: / | ||
+ | |||
+ | # mount -v / | ||
+ | mount: / | ||
+ | mount: / | ||
+ | |||
+ | # mount -v / | ||
+ | mount: / | ||
+ | mount: / | ||
+ | |||
+ | # df -hl | ||
+ | Filesystem | ||
+ | devtmpfs | ||
+ | tmpfs | ||
+ | tmpfs | ||
+ | tmpfs | ||
+ | / | ||
+ | / | ||
+ | / | ||
+ | tmpfs | ||
+ | / | ||
+ | / | ||
+ | / | ||
+ | / | ||
+ | </ | ||
+ | |||
+ | |||
+ | |||
+ | ==== Posada | ||
+ | |||
+ | Poso en marxa per primer cop el TopSpin i detecta la consola i arrenca amb la " | ||
< | < | ||
+ | $ topspin | ||
TopSpin 3.6.3 - Copyright (C) 2021 Bruker BioSpin GmbH | TopSpin 3.6.3 - Copyright (C) 2021 Bruker BioSpin GmbH | ||
Installation directory: "/ | Installation directory: "/ | ||
Waiting for CodeMeter license | Waiting for CodeMeter license | ||
- | 2021-08-11 13:21:55.389 +0200 | + | 2021-08-24 13:32:12.790 +0200 |
Cannot checkout TopSpin CodeMeter license | Cannot checkout TopSpin CodeMeter license | ||
No matching license entry found for feature " | No matching license entry found for feature " | ||
Line 172: | Line 270: | ||
checking connection to spectrometer (may last several minutes) | checking connection to spectrometer (may last several minutes) | ||
- | CPR : 2021-08-11 13:21:57.046 +0200 | + | CPR : 2021-08-24 13:32:14.290 +0200 |
TopSpin is currently running under | TopSpin is currently running under | ||
the spectrometer service license. | the spectrometer service license. | ||
Line 180: | Line 278: | ||
https:// | https:// | ||
</ | </ | ||
+ | |||
===== Configuració de l' | ===== Configuració de l' | ||
Line 185: | Line 284: | ||
Un cop es posa en marxa el TopSpin, s'obre una finestra on posa que cal executar '' | Un cop es posa en marxa el TopSpin, s'obre una finestra on posa que cal executar '' | ||
- | Executo '' | + | Executo '' |
+ | |||
+ | però quan provo a editar, em dona un error perquè no es pot connectar a la DRU ja que la xarxa de l' | ||
Crec que la millor solució serà reiniciar l' | Crec que la millor solució serà reiniciar l' | ||
Line 194: | Line 295: | ||
* Spectrometer Description | * Spectrometer Description | ||
- | * Description: | + | * Description: |
* Spectrometer Data | * Spectrometer Data | ||
- | * 1H Spectrometer frequency: | + | * 1H Spectrometer frequency: |
* Security Options | * Security Options | ||
- | * Enable power check: | + | * Enable power check: |
* Optional Standard Devices | * Optional Standard Devices | ||
- | * Bruker Automatic Changer (BACS) | + | * MAS2 control unit: connected to: tty05 |
- | * Variable Temperature Unit connected to: | + | * Eurotherm VTU: device |
- | * Options for the Sample Changer | + | |
- | * Sample lift controlled by: Sample Changer | + | |
- | * Delay between insert of sample and next command: | + | |
- | * Start experiment while sample changer in motion: | + | |
- | Es mostra un error perquè no detecta els amplificadors. Caldrà reiniciar-los i tornar a repetir '' | + | Problemes: |
- | < | + | * Com que la MAS Unit està aturada, no la detecta. |
- | BSMS Error: | + | * Solució: poso en marxa la MAS Unit per quan torni a fer '' |
+ | * A l'hora de configurar les connexions de RF, no puc configurar les connexions a la sonda perquè la BBI muntada no té PICS, i tampoc puc fer '' | ||
+ | * Solució: copio els fitxers de configuració de les sondes que hi havia a l' | ||
+ | * Prosol: copio la carpeta '' | ||
+ | * Cortab: copio la carpeta '' | ||
+ | * Preemphasis: | ||
+ | * Bruker Gradient Amplifier (BGA): no surt al fitxer '' | ||
+ | * Solució: el reinicio perquè el detecti la propera vegada que executi '' | ||
- | SampleTransporter: | + | Després de repetir |
- | </ | + | |
- | + | ||
- | malauradament per ara no el puc posar en marxa. | + | |
- | + | ||
- | Després de reiniciar els amplificadors, | + | |
==== Fitxer " | ==== Fitxer " | ||
Line 227: | Line 326: | ||
Path : / | Path : / | ||
- | Date : | + | Date : |
Release | Release | ||
Installed in : / | Installed in : / | ||
- | Host : cie-56-18.uab.cat | + | Host : cie-54-214.uab.cat |
OS : CentOS Linux release 7.9.2009 (Core) | OS : CentOS Linux release 7.9.2009 (Core) | ||
- | CPU : Intel(R) Xeon(R) CPU W3550 @ 3.07GHz (4 cores at 3067 MHz) | + | CPU : Intel(R) Xeon(R) CPU E3-1246 v3 @ 3.50GHz (8 cores at 3500 MHz with Hyperthreading) |
- | User : | + | User : |
- | System | + | System |
- | 1H-frequency : 600.13 MHz | + | 1H-frequency : 400.13 MHz |
- | Description | + | Description |
- | Location | + | Configured in: cie-54-214.uab.cat:/ |
- | Bruker Order : PH000806 | + | |
- | Configured in: cie-56-18.uab.cat:/ | + | |
IPSO: connected to spectrometer subnet | IPSO: connected to spectrometer subnet | ||
- TCP/IP address = 149.236.99.90 | - TCP/IP address = 149.236.99.90 | ||
- | - IPSO type: 19" | + | - IPSO type: AQS |
- Tctrl : 1 | - Tctrl : 1 | ||
- | - Fctrls: | + | - Fctrls: |
- Gctrl1: with digital preemphasis | - Gctrl1: with digital preemphasis | ||
- | - Rctrl : none | + | - Rctrl : 1 |
- FREDs : none | - FREDs : none | ||
- DPP : 1 | - DPP : 1 | ||
- | DRU1: DEB_DEFAULT | + | DRU1: AQS DRU Z100977/ |
- | - TCP/IP address = 149.236.99.77 | + | - TCP/IP address = 149.236.99.89 |
- Firmware Version = 170619 | - Firmware Version = 170619 | ||
- DRU1 controls AQS-Rack and HPPR/2 | - DRU1 controls AQS-Rack and HPPR/2 | ||
- | AQS: connected to 149.236.99.77:/dev/tty10 | + | AQS: connected to 149.236.99.89:/dev/tty10 |
_Slot_ SBSB _____________________Board_____________________ | _Slot_ SBSB _____________________Board_____________________ | ||
Number Addr Type HW-VS FW-VS ID ECL Name | Number Addr Type HW-VS FW-VS ID ECL Name | ||
----------------------------------------------------------- | ----------------------------------------------------------- | ||
- | | + | |
- | | + | |
- | | + | |
- | | + | |
- | 6 | + | 9 |
21 0x21 0xcf | 21 0x21 0xcf | ||
- | -- | + | -- |
| | ||
Logical Receiver/ | Logical Receiver/ | ||
+ | Router: 1 AQS-Minirouter | ||
- | Router: none installed | + | Amplifiers (AQS configuration): |
- | + | | |
- | Transmitters at the spectrometer subnet: | + | 1 1 |
- | ---------------------------------------- | + | |
- | BLA_W1345096_0091 W1345096/0091 ECL 1: | + | 3 2 |
- | - TCP/IP address = 149.236.99.93 | + | |
- | - Firmware VS = 20120627 | + | |
- | - Amplifier | + | |
- | - Router | + | |
- | - Controller | + | |
- | BLA_W1345092_0060 W1345092/0060 ECL 0: | + | |
- | - TCP/IP address = 149.236.99.92 | + | |
- | - Firmware VS = 20120627 | + | |
- | - Amplifier | + | |
- | - Router | + | |
- | - Controller | + | |
Gradient amplifiers at the spectrometer subnet: | Gradient amplifiers at the spectrometer subnet: | ||
---------------------------------------------- | ---------------------------------------------- | ||
- | BGA1: BGA_W1213891_0009 | + | BGA1: BGA_W1213891_0040 |
- | - TCP/IP address | + | - TCP/IP address |
- Firmware version = 20080206 | - Firmware version = 20080206 | ||
- Web version | - Web version | ||
Line 298: | Line 385: | ||
BSMS: BSMS/2 connected to ethernet | BSMS: BSMS/2 connected to ethernet | ||
- TCP/IP address = 149.236.99.20 | - TCP/IP address = 149.236.99.20 | ||
- | - ELCB firmware version = 20210212 | + | - ELCB firmware version = 20150423 |
- | - SCB channels = 40 | + | - SCB channels = 20 |
- | - Shim System = BOSS2-SB | + | - Shim System = BOSS1-SB |
- | - 2HTX Amplifier: | + | - 2HTX Amplifier: available |
- Lock: installed | - Lock: installed | ||
- | - VTU_SPB = BSMS/2 SPB-E SENSOR & PNEUMATIC BD: Z115192/ | ||
- | - VTU_VPSB1 = BSMS/2 VARIABLE POWER SUPPLY BD: Z115193/ | ||
- | |||
- | VTU: in BSMS/2 connected to ethernet | ||
- | - TCP/IP address = 149.236.99.20 | ||
- | |||
- | SampleCase: in BSMS/2 connected to ethernet | ||
- | - TCP/IP address = 149.236.99.20 | ||
- | Bruker Automatic Changer: device | + | MAS2 control unit: connected to 149.236.99.90:/ |
- | - Capacity: 24 holders | + | - Boot Software |
- | - Firmware: 970111 | + | - Application Software |
- | - use BACS air = yes | + | - Insert Time : 10 s |
- | - BACS sx delay = 10 s | + | - Eject Time : |
- | - Sample Rail fast changer mode = no | + | - Spin Lock Tolerance |
- | Eurotherm VTU: device connected to 149.236.99.90:/ | + | Eurotherm VTU: device connected to 149.236.99.90:/ |
- | - (used by TopSpin) | + | |
Preamplifiers : | Preamplifiers : | ||
- | HPPR2: - HPPR/2 preamplifier connected to 149.236.99.77:/dev/tty10 | + | HPPR2: - HPPR/2 preamplifier connected to 149.236.99.89:/dev/tty10 |
Type : HPPR/2 | Type : HPPR/2 | ||
Controller: Cover/1 with Application firmware = AQ | Controller: Cover/1 with Application firmware = AQ | ||
15 LEDs for tuning, 15 LEDs for matching | 15 LEDs for tuning, 15 LEDs for matching | ||
- | Module | + | Module |
- | PN=Z003462, SN=00485 from 20061101 | + | PN=Z003959, SN=00418 from 20070319 |
- | Module | + | Module |
- | PN=Z003506, SN=00529 from 20061024 | + | PN=Z003959, SN=00418 from 20070319 |
- | Module | + | Module |
- | PN=Z003473, SN=00491 from 20061206 | + | PN=Z003504, SN=00415 from 20070425 |
Gradient Controller cable connections | Gradient Controller cable connections | ||
-------------------------------------------------------------------- | -------------------------------------------------------------------- | ||
- | GCtrl1: connected via DPP to GREAT 1-10 Gradient Amplifier Unit W1213891/0009 | + | GCtrl1: connected via DPP to GREAT 1-10 Gradient Amplifier Unit W1213891/0040 |
- | RF cable connections (detected) | + | RF cable connections (assumed) |
-------------------------------------------------------------------- | -------------------------------------------------------------------- | ||
- | SGU1 NORM output -> input 1 of transmitter 1 (BLAXH2H300/100/150 E 200-600MHZ W1345096/ | + | SGU1 NORM output -> input 2 of transmitter 1 (BLA2BB 150/60 20-400 W1345049/1817) |
- | SGU1 AUX output -> input 4 of transmitter | + | SGU1 AUX output -> input 1 of transmitter |
- | SGU2 NORM output -> input 2 of transmitter 1 (BLAXH2H300/100/150 E 200-600MHZ W1345096/ | + | SGU2 NORM output -> input 3 of transmitter 1 (BLA2BB 150/60 20-400 W1345049/1817) |
SGU2 AUX output -> TUNE signal input of HPPR | SGU2 AUX output -> TUNE signal input of HPPR | ||
- | SGU3 NORM output -> input 3 of transmitter 1 (BLAXH2H300/ | ||
- | SGU3 AUX output -> input 1 of transmitter 2 (BLAX300 E 6-365MHZ W1345092/ | ||
- | Blanking cable connections (detected) | + | Blanking cable connections (assumed) |
-------------------------------------------------------------------- | -------------------------------------------------------------------- | ||
- | transmitter 1 = BLAXH2H300/100/150 E 200-600MHZ W1345096/0091 at TCP/IP 149.236.99.93: | + | transmitter 1 = BLA2BB 150/60 20-400 W1345049/1817: |
- | - amplifier | + | - amplifier |
- | - amplifier | + | - amplifier |
- | - amplifier 2H-150W needs no blanking | + | |
- | transmitter 2 = BLAX300 E 6-365MHZ W1345092/ | + | transmitter 2 = 2HTX in BSMS: |
- | - amplifier | + | - amplifier |
</ | </ | ||
Line 375: | Line 450: | ||
# do not edit, changes are lost after next ' | # do not edit, changes are lost after next ' | ||
unit = AQS | unit = AQS | ||
- | host = 149.236.99.77 | + | host = 149.236.99.89 |
device = /dev/tty10 | device = /dev/tty10 | ||
type = RS485 | type = RS485 | ||
stty = 9600 min 1 time 50 cs8 hupcl cread clocal | stty = 9600 min 1 time 50 cs8 hupcl cread clocal | ||
- | ./ | + | ./ |
# TOPSPIN alpha TTY configuration file | # TOPSPIN alpha TTY configuration file | ||
# created automatically by ' | # created automatically by ' | ||
# do not edit, changes are lost after next ' | # do not edit, changes are lost after next ' | ||
- | unit | + | unit |
host = 149.236.99.90 | host = 149.236.99.90 | ||
- | device = /dev/tty01 | + | device = /dev/tty05 |
+ | type = RS232 | ||
+ | stty = 9600 cs8 cstopb hupcl cread clocal ignpar istrip igncr isig icanon noflsh | ||
+ | |||
+ | ./ | ||
+ | # TOPSPIN alpha TTY configuration file | ||
+ | # created automatically by ' | ||
+ | # do not edit, changes are lost after next ' | ||
+ | unit = MAS2 control unit | ||
+ | host = 149.236.99.90 | ||
+ | device = /dev/tty05 | ||
type = RS232 | type = RS232 | ||
stty = 9600 min 1 time 50 cs8 hupcl cread clocal | stty = 9600 min 1 time 50 cs8 hupcl cread clocal | ||
Line 395: | Line 480: | ||
# do not edit, changes are lost after next ' | # do not edit, changes are lost after next ' | ||
unit = HPPR/2 preamplifier | unit = HPPR/2 preamplifier | ||
- | host = 149.236.99.77 | + | host = 149.236.99.89 |
device = /dev/tty10 | device = /dev/tty10 | ||
type = RS485 | type = RS485 | ||
Line 406: | Line 491: | ||
unit = Eurotherm VTU | unit = Eurotherm VTU | ||
host = 149.236.99.90 | host = 149.236.99.90 | ||
- | device = /dev/tty05 | + | device = /dev/tty04 |
type = RS232 | type = RS232 | ||
stty = 9600 time 5 parenb cs7 cread clocal istrip | stty = 9600 time 5 parenb cs7 cread clocal istrip |