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informatica:hp_xw4400_400sb_topspin361 [2019/06/08 03:03] miquel [Primer intent d'executar TopSpin] |
informatica:hp_xw4400_400sb_topspin361 [2019/06/09 21:25] miquel [Instal·lació del Topsin 3.6.1] |
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====== Instal·lació del Topsin 3.6.1 ====== | ====== Instal·lació del Topsin 3.6.1 ====== | ||
+ | |||
+ | S' | ||
<WRAP todo> | <WRAP todo> | ||
**2019-06-07 - TREBALL EN MARXA / WORK IN PROGRESS** | **2019-06-07 - TREBALL EN MARXA / WORK IN PROGRESS** | ||
* :ok: actualitzar el sistema operatiu Debian GNU/Linux | * :ok: actualitzar el sistema operatiu Debian GNU/Linux | ||
- | * :warn: instal·lar i configurar el TopSpin 3.6.1 | + | * :ok: instal·lar i configurar el TopSpin 3.6.1 |
- | * :warn: recuperar els //parameter sets// a partir d'una còpia antiga i de l' | + | * :ok: còpia automàtica dels //parameter sets// |
- | * :warn: comprovar el CORTAB | + | * :ok: comprovar el CORTAB |
- | * no està disponible per tots els nuclis | + | * :ok: definir els valors de referència de durada i potència dels pulsos ('' |
- | * caldrà recalibrar de nou els que manquen | + | * :ok: No ha calgut fer res perquè no ha canviat: exportar la carpeta |
- | * :warn: definir els valors de referència de durada i potència dels pulsos ('' | + | * :fail: exportar les carpetes de llistes (pulse programs, etc.) al servidor de dades i fer-les accessibles a través del servidor de ftp. |
- | * tasca feta pels nuclis més habituals | + | |
- | * :warn: convertir els //parameter sets// | + | |
- | * tasca feta pels //parameter sets// més habituals. Per la resta cal executar '' | + | |
- | * :ok: exportar les carpetes | + | |
* :fail: optimar l' | * :fail: optimar l' | ||
- | * :fail: comprovar la sintonia del canal BB pels nuclis més habituals, i, si cal, corregir els valors per defecte de Tuning & Matching. | + | * :ok: comprovar la sintonia del canal BB pels nuclis més habituals, i, si cal, corregir els valors per defecte de Tuning & Matching. |
- | * ... | + | |
- | * ... | + | |
</ | </ | ||
- | S' | ||
Line 511: | Line 506: | ||
accumctrlserver | accumctrlserver | ||
+ | : | ||
+ | bsmsproxyserver | ||
+ | libXp.so.6 => not found | ||
+ | cf | ||
: | : | ||
chkpwd | chkpwd | ||
Line 520: | Line 519: | ||
mvcube | mvcube | ||
: | : | ||
+ | nmrquant | ||
+ | nmrsim.mod | ||
+ | libXp.so.6 => not found | ||
+ | peak | ||
+ | plot | ||
+ | libXp.so.6 => not found | ||
+ | probeserver | ||
+ | proc1d | ||
proc2d | proc2d | ||
libgfortran.so.3 => not found | libgfortran.so.3 => not found | ||
Line 534: | Line 541: | ||
* :ok: libgfortran-4.9-dev: | * :ok: libgfortran-4.9-dev: | ||
* Instal·la automàticament els següents paquets dels quals en depèn: libasan1: | * Instal·la automàticament els següents paquets dels quals en depèn: libasan1: | ||
+ | * :ok: libxp-dev: | ||
+ | * Instal·la automàticament els següents paquets dels quals en depèn: libpthread-stubs0-dev: | ||
- | Un cop resolt | + | <WRAP info> |
+ | La biblioteca '' | ||
+ | </ | ||
+ | |||
+ | <WRAP tip> | ||
+ | Aquesta comanda permet comprovar si tots els executables del tipus "ELF 32-bit" | ||
+ | |||
+ | < | ||
+ | for FILE in `file * | grep "ELF 32-bit" | ||
+ | do echo $FILE; \ | ||
+ | ldd $FILE | grep "not found" | grep " | ||
+ | done | ||
+ | </ | ||
+ | </ | ||
+ | |||
+ | |||
+ | Un cop resolts | ||
===== Configuració amb " | ===== Configuració amb " | ||
Line 546: | Line 571: | ||
CONFIGURATION INFORMATION | CONFIGURATION INFORMATION | ||
========================= | ========================= | ||
- | ... | + | |
- | ... | + | Path : / |
+ | Date : Sun Jun 9 19:18:38 2019 | ||
+ | Release | ||
+ | Installed in : / | ||
+ | Host : cie-55-31 | ||
+ | OS : Linux 4.9.0-0.bpo.9-amd64 #1 SMP Debian 4.9.168-1+deb9u2~deb8u1 (2019-05-14) | ||
+ | CPU : Intel(R) Core(TM)2 CPU 6600 @ 2.40GHz (2 cores at 2400 MHz) | ||
+ | User : sermnadmin (SeRMN-UAB Staff) | ||
+ | System | ||
+ | 1H-frequency : 400.13 MHz | ||
+ | Description | ||
+ | Location | ||
+ | Bruker Order : FIXME | ||
+ | Configured in: cie-55-31:/ | ||
+ | |||
+ | IPSO: connected to spectrometer subnet | ||
+ | - TCP/IP address = 149.236.99.90 | ||
+ | - IPSO type: AQS | ||
+ | - Tctrl : 1 | ||
+ | - Fctrls: 2 | ||
+ | - Gctrl1: with digital preemphasis | ||
+ | - Rctrl : 1 | ||
+ | - FREDs : none | ||
+ | - DPP : 1 | ||
+ | |||
+ | DRU1: AQS DRU Z100977/ | ||
+ | - TCP/IP address = 149.236.99.89 | ||
+ | - Firmware Version = 170619 | ||
+ | - DRU1 controls AQS-Rack and HPPR/2 | ||
+ | |||
+ | AQS: connected to 149.236.99.89:/ | ||
+ | _Slot_ SBSB _____________________Board_____________________ | ||
+ | Number Addr Type HW-VS FW-VS ID ECL Name | ||
+ | ----------------------------------------------------------- | ||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | 21 0x21 0xcf | ||
+ | -- 0x20 0xd1 | ||
+ | | ||
+ | Logical Receiver/ | ||
+ | |||
+ | |||
+ | Router: 1 AQS-Minirouter | ||
+ | |||
+ | Amplifiers (AQS configuration): | ||
+ | RO Amplifier | ||
+ | | ||
+ | | ||
+ | | ||
+ | |||
+ | |||
+ | Gradient amplifiers at the spectrometer subnet: | ||
+ | ---------------------------------------------- | ||
+ | BGA1: BGA_W1213891_0040 | ||
+ | - TCP/IP address | ||
+ | - Firmware version = 20080206 | ||
+ | - Web version | ||
+ | - Current limits | ||
+ | |||
+ | BSMS: BSMS/2 connected to ethernet | ||
+ | - TCP/IP address = 149.236.99.20 | ||
+ | - ELCB firmware version = 20150423 | ||
+ | - SCB channels = 20 | ||
+ | - Shim System = BOSS1-SB | ||
+ | - 2HTX Amplifier: available | ||
+ | - Lock: installed | ||
+ | |||
+ | MAS2 control unit: connected to 149.236.99.90:/ | ||
+ | - Boot Software | ||
+ | - Application Software : 20120329 | ||
+ | - Insert Time : 10 s | ||
+ | - Eject Time : 10 s | ||
+ | - Spin Lock Tolerance | ||
+ | |||
+ | Eurotherm VTU: device connected to 149.236.99.90:/ | ||
+ | |||
+ | Preamplifiers : | ||
+ | HPPR2: - HPPR/2 preamplifier connected to 149.236.99.89:/ | ||
+ | Type : HPPR/2 | ||
+ | Controller: Cover/1 with Application firmware = AQ | ||
+ | 15 LEDs for tuning, 15 LEDs for matching | ||
+ | Module | ||
+ | PN=Z003959, SN=00418 from 20070319 | ||
+ | Module | ||
+ | PN=Z003959, SN=00418 from 20070319 | ||
+ | Module | ||
+ | PN=Z003504, SN=00415 from 20070425 | ||
+ | |||
+ | |||
+ | |||
+ | Gradient Controller cable connections | ||
+ | -------------------------------------------------------------------- | ||
+ | GCtrl1: connected via DPP to GREAT 1-10 Gradient Amplifier Unit W1213891/ | ||
+ | |||
+ | RF cable connections (assumed) | ||
+ | -------------------------------------------------------------------- | ||
+ | SGU1 NORM output -> input 2 of transmitter 1 (BLA2BB 150/60 20-400 W1345049/ | ||
+ | SGU1 AUX output -> input 1 of transmitter 2 (2HTX in BSMS) | ||
+ | SGU2 NORM output -> input 3 of transmitter 1 (BLA2BB 150/60 20-400 W1345049/ | ||
+ | SGU2 AUX output -> TUNE signal input of HPPR | ||
+ | |||
+ | Blanking cable connections (assumed) | ||
+ | -------------------------------------------------------------------- | ||
+ | transmitter 1 = BLA2BB 150/60 20-400 W1345049/ | ||
+ | - amplifier B-150W uses blanking 1 | ||
+ | - amplifier B-60W uses blanking 2 | ||
+ | |||
+ | transmitter 2 = 2HTX in BSMS: | ||
+ | - amplifier 2H-20W uses blanking 3 | ||
</ | </ | ||
Line 565: | Line 701: | ||
</ | </ | ||
- | El TopSpin detecta el PICS de la sonda, i es descarrega el paràmetres de configuració i la configura correctament. Però quan comprovo el funcionament de la sintonia automàtica ATMA, trobo que funciona amb un experiment de protó (rpar sr_proto all) i de fósfor amb i sense desacoblament (rpar sr_fosfor[cpd] all), però que no funciona amb carboni. | + | El TopSpin detecta el PICS de la sonda, i es descarrega el paràmetres de configuració i la configura correctament. Però quan comprovo el funcionament de la sintonia automàtica ATMA, em dona un missatge d' |
- | + | ||
- | Amb un experiment de carboni (rpar sr_carboni all) dóna un missatge | + | |
< | < | ||
- | atma_ProbeCorba_impl:: | + | tma Info |
+ | atma_ProbeCorba_impl:: | ||
+ | (Original message = Atma Info | ||
+ | atma_ProbeCorba_impl:: | ||
+ | |||
+ | ==================================================== | ||
+ | atma_ProbeCorba_impl:: | ||
+ | |||
+ | 9 June 2019 20: | ||
+ | Topspin Version | ||
+ | OS Name = Linux 4.9.0-0.bpo.9-amd64 | ||
+ | JVM Version | ||
+ | JVM Total memory = 244 MB | ||
+ | JVM Free memory = 80 MB | ||
+ | |||
+ | java.lang.Exception: | ||
+ | at bruker.bio.topspin.bfw.gui.warn.AbstractMessage.getDetailsString(AbstractMessage.java: | ||
+ | at bruker.bio.topspin.bfw.gui.warn.AbstractMessage.setMsgSource(AbstractMessage.java: | ||
+ | at bruker.bio.topspin.bfw.gui.warn.AbstractMessage.< | ||
+ | at de.bruker.nmr.mfw.base.BWarning.< | ||
+ | at de.bruker.nmr.mfw.base.BError.< | ||
+ | at de.bruker.nmr.sc.atma.impl.AtmaPanelStart.showAtmaException(AtmaPanelStart.java: | ||
+ | at de.bruker.nmr.sc.atma.impl.AtmaPanelStart.connect(AtmaPanelStart.java: | ||
+ | at de.bruker.nmr.sc.atma.impl.AtmaPanelStart.start(AtmaPanelStart.java: | ||
+ | at de.bruker.nmr.sc.atma.impl.AtmaPanelStart.atmm(AtmaPanelStart.java: | ||
+ | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) | ||
+ | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java: | ||
+ | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java: | ||
+ | at java.lang.reflect.Method.invoke(Method.java: | ||
+ | at de.bruker.nmr.mfw.base.CmdThreadImpl.executeMethod(CmdThreadImpl.java: | ||
+ | at de.bruker.nmr.mfw.base.CmdThreadImpl.doJmethod(CmdThreadImpl.java: | ||
+ | at de.bruker.nmr.mfw.base.CmdThreadImpl.exec(CmdThreadImpl.java: | ||
+ | at de.bruker.nmr.mfw.base.CmdThreadImpl.run(CmdThreadImpl.java: | ||
</ | </ | ||
- | Aquest missatge es correspon al següent error al fitxer /// | + | Aquest missatge es correspon al següent error al fitxer /// |
< | < | ||
- | 10:54:39.938 | + | root@cie-55-31:/ |
- | | + | 2019-06-09 20:15:10.340 +0200 INFO |
- | 10:56:25.281 | + | 2019-06-09 20:15:10.340 +0200 INFO |
- | 10:56:25.288 | + | ... |
- | 10:56:25.288 | + | 2019-06-09 20: |
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | Name: PA BBO 400S1 BBF-H-D-05 Z | ||
+ | ID: | ||
+ | ATM Nuclei: 1H BB | ||
+ | Required ATMA-SW Version: 2.1] | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | Nuclei: 19F 7Li 31P 117Sn 13C 11B 87Rb 23Na 79Br 113Cd 29Si 127I 77Se 2H 17O 15N 14N 95Mo 109Ag 119Sn 195Pt] | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 1H Match fine: 2 | ||
+ | BB Tune fine: 9 | ||
+ | BB Match fine: 3 | ||
+ | BB Tune coarse 100: 6 | ||
+ | BB Tune coarse 10: 7 | ||
+ | BB Tune coarse 1: 8 | ||
+ | BB Match coarse 10: 4 | ||
+ | BB Match coarse 1: 5 | ||
+ | ] | ||
+ | ... | ||
+ | 2019-06-09 20: | ||
+ | ... | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | error in command ' | ||
+ | Error 100 in CAPH: I2C error: I2C device did not respond | ||
+ | 2019-06-09 20: | ||
+ | error in command ' | ||
+ | Error 100 in CAPH: I2C error: I2C device did not respond | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20: | ||
+ | 2019-06-09 20:15:16.858 +0200 INFO | ||
+ | 2019-06-09 20:15:16.858 +0200 INFO | ||
+ | 2019-06-09 20:15:16.858 +0200 INFO | ||
</ | </ | ||